Hi,
I recently took a panorama in a very dark place. The only lighting came from small luminarias and the stained glass windows near the roof.
http://www.360cities.net/image/memorial-of-la-citadelle-de-quebec#0.00,0.00,70.0
This panorama comprises 28 photos. I used full flash for most of the photos, except those near the door where I reduced it to 2/3 of its force. The result is quite good, I think :-)
Maybe it worked because it was a small place and the walls did not reflect the flash too much. I dont know if it would have been as good in a much bigger place.
The bottom line is: what have you got to lose to try it !
Vincent Royer